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UCL Bioinformatics Group

UCL bioinformatics group repositories

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  1. protein-vae protein-vae Public

    Variational autoencoder for protein sequences - add metal binding sites and generate sequences for novel topologies

    Python 94 16

  2. s4pred s4pred Public

    A tool for accurate prediction of a protein's secondary structure from only it's amino acid sequence

    Python 63 14

  3. DMPfold DMPfold Public

    De novo protein structure prediction using iteratively predicted structural constraints

    C 60 16

  4. psipred psipred Public

    PSIPRED Protein Secondary Structure Predictor

    Java 58 13

  5. DMPfold2 DMPfold2 Public

    Fast and accurate protein structure prediction

    Python 57 14

  6. cgdms cgdms Public

    Differentiable molecular simulation of proteins with a coarse-grained potential

    Python 56 4

Repositories

Showing 10 of 51 repositories
  • PFP Public
    psipred/PFP’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 23, 2026
  • mempack Public

    Membrane alpha helix packing and orientation predicrtor

    psipred/mempack’s past year of commit activity
    Perl 1 1 0 0 Updated Jan 7, 2026
  • psipred_react Public

    A react port of the psipred_webserver dynamic pages

    psipred/psipred_react’s past year of commit activity
    JavaScript 1 0 1 0 Updated Nov 21, 2025
  • ansible_rocky Public

    new, united ansible repo for rocky machines

    psipred/ansible_rocky’s past year of commit activity
    Shell 0 1 0 0 Updated Oct 8, 2025
  • merizo_search Public

    Fast protein domain structure embedding+search tool

    psipred/merizo_search’s past year of commit activity
    Python 27 GPL-3.0 6 1 0 Updated Sep 21, 2025
  • p53_docking Public

    Project code for Chris Morris collab

    psipred/p53_docking’s past year of commit activity
    Python 0 0 0 0 Updated Aug 6, 2025
  • psipred Public

    PSIPRED Protein Secondary Structure Predictor

    psipred/psipred’s past year of commit activity
    Java 58 13 0 0 Updated Jul 3, 2025
  • ted-tools Public

    ML toolset for creating TED: The Encyclopedia of Domains

    psipred/ted-tools’s past year of commit activity
    Python 25 MIT 6 3 2 Updated May 29, 2025
  • Merizo Public

    Fast and accurate protein domain segmentation using Invariant Point Attention

    psipred/Merizo’s past year of commit activity
    Python 44 GPL-3.0 7 1 0 Updated May 22, 2025
  • blast_cache Public

    PSIBLAST and BLAST cache

    psipred/blast_cache’s past year of commit activity
    Python 0 GPL-3.0 0 3 3 Updated May 21, 2025