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1. smk-bac-assembly smk-bac-assembly Public

   Snakemake workflow to assemble and annotate bacterial genomes from HiFi reads

   Python

2. extract-gff-attribute extract-gff-attribute

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   extract_gff_attribute <- function(gtf_attributes, att_of_interest){

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     # takes in the 9th column from a GTF with the attributes and returns a vector 

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     # with the selected attibute. The attribute name must match exactly.

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     att_flat <- unlist(gtf_attributes)

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     att_of_interest <- paste0(att_of_interest,"=")