Update config_automation.yml

.github/workflows/pull_request.yml

@@ -162,6 +162,8 @@ jobs:
           git fetch --all
           git checkout $branch_name
           git merge -s recursive --strategy-option=theirs origin/${{ github.head_ref }} --allow-unrelated-histories
+          quarto --version
+          quarto check
         shell: bash
 
       # Run bookdown rendering
@@ -174,7 +176,9 @@ jobs:
       - name: Render quarto version
         id: quarto
         if: ${{needs.yaml-check.outputs.toggle_website == 'quarto' }}
-        run: Rscript -e "quarto::quarto_render('.')"
+        run: |
+          quarto::quarto_render('.')
+        shell: Rscript {0}
 
       # This checks on the steps before it and makes sure that they completed.
       # If the renders didn't complete we don't want to commit the file changes

_quarto.yml

@@ -7,14 +7,13 @@ book:
   author: Howard Baek
   date: "4/3/2024"
   favicon: img/favicon.ico
-  bread-crumbs: false
 
   page-navigation: true
   search: true
   repo-url: https://github.com/fhdsl/OTTR_Quarto
-  repo-actions: [edit] 
+  repo-actions: [edit]
   issue-url: https://docs.google.com/forms/d/e/1FAIpQLSfBvVELBg8lcynKj0TrzMlov1zil-Sbkh9VhMKRcSpeo1xo6g/viewform
-  
+
   chapters:
     - index.qmd
     - intro.qmd
@@ -29,27 +28,27 @@ book:
         - third-section-new-chapter.qmd
     - conclusion.qmd
     - references.qmd
-  
-  sidebar: 
+
+  sidebar:
     logo: "img/logo.png"
     logo-href: "https://hutchdatascience.org/"
     foreground: "#1B365D"
-  
+
   page-footer:
     left: |
-      This book was built with <a href="https://quarto.org/" style="color: #fff;">Quarto</a> using 
+      This book was built with <a href="https://quarto.org/" style="color: #fff;">Quarto</a> using
       <a href="https://github.com/fhdsl/OTTR_Quarto" style="color: #fff;">OTTR</a>.
     center: |
       All illustrations <a href="https://creativecommons.org/licenses/by/4.0/" style="color: #fff;">CC-BY. </a>
       <br>
       All other materials <a href= "https://creativecommons.org/licenses/by/4.0/" style="color: #fff;"> CC-BY </a> unless noted otherwise.
-    right: 
+    right:
       - icon: github
         href: https://github.com/
       - icon: slack
         href: https://fhdata.slack.com/join/signup#/domain-signup
 
-      
+
 
 bibliography: references.bib
 
@@ -60,17 +59,17 @@ format:
     css: style.css
     linkcolor: "#00C1D5"
     mainfont: "Karla"
-    
+
     sidebar: true
     toc: true
-  
+
     code-link: true
     code-copy: true
-    
+
     link-external-newwindow: true
-  
+
     image: img/favicon.ico
     license: "CC BY"
 knitr:
   opts_chunk:
-    fig.path: "resources/images/figure/"
+    fig.path: "resources/images/figure/"

config_automation.yml

@@ -25,4 +25,4 @@ render-coursera: no
 
 # What docker image should be used for rendering?
 # The default is jhudsl/base_ottr:latest
-rendering_docker_image: 'jhudsl/ottr_jupyter:latest'
+rendering-docker-image: 'jhudsl/ottr_jupyter:main'