diff --git a/classroom_data/marker_genes.json b/classroom_data/marker_genes.json index 2cf64f5..ae1f681 100644 --- a/classroom_data/marker_genes.json +++ b/classroom_data/marker_genes.json @@ -1,80 +1,28 @@ { - "CD14+ Mono": ["FCN1", "CD14"], - "CD16+ Mono": ["TCF7L2", "FCGR3A", "LYN"], - "ID2-hi myeloid prog": [ - "CD14", - "ID2", - "VCAN", - "S100A9", - "CLEC12A", - "KLF4", - "PLAUR" - ], - "cDC1": ["CLEC9A", "CADM1"], - "cDC2": [ - "CST3", - "COTL1", - "LYZ", - "DMXL2", - "CLEC10A", - "FCER1A" - ], - "Normoblast": ["SLC4A1", "SLC25A37", "HBB", "HBA2", "HBA1", "TFRC"], - "Erythroblast": ["MKI67", "HBA1", "HBB"], - "Proerythroblast": [ - "CDK6", - "SYNGR1", - "HBM", - "GYPA" - ], - "NK": ["GNLY", "NKG7", "CD247", "GRIK4", "FCER1G", "TYROBP", "KLRG1", "FCGR3A"], - "ILC": ["ID2", "PLCG2", "GNLY", "SYNE1"], - "Lymph prog": [ - "VPREB1", - "MME", - "EBF1", - "SSBP2", - "BACH2", - "CD79B", - "IGHM", - "PAX5", - "PRKCE", - "DNTT", - "IGLL1" - ], - "Naive CD20+ B": ["MS4A1", "IL4R", "IGHD", "FCRL1", "IGHM"], - "B1 B": [ - "MS4A1", - "SSPN", - "ITGB1", - "EPHA4", - "COL4A4", - "PRDM1", - "IRF4", - "CD38", - "XBP1", - "PAX5", - "BCL11A", - "BLK", - "IGHD", - "IGHM", - "ZNF215" - ], - "Transitional B": ["MME", "CD38", "CD24", "ACSM3", "MSI2"], - "Plasma cells": ["MZB1", "HSP90B1", "FNDC3B", "PRDM1", "IGKC", "JCHAIN"], - "Plasmablast": ["XBP1", "RF4", "PRDM1", "PAX5"], - "CD4+ T activated": ["CD4", "IL7R", "TRBC2", "ITGB1"], - "CD4+ T naive": ["CD4", "IL7R", "TRBC2", "CCR7"], - "CD8+ T": ["CD8A", "CD8B", "GZMK", "GZMA", "CCL5", "GZMB", "GZMH", "GZMA"], - "T activation": ["CD69", "CD38"], - "T naive": ["LEF1", "CCR7", "TCF7"], - "pDC": ["GZMB", "IL3RA", "COBLL1", "TCF4"], - "G/M prog": ["MPO", "BCL2", "KCNQ5", "CSF3R"], - "HSC": ["NRIP1", "MECOM", "PROM1", "NKAIN2", "CD34"], - "MK/E prog": [ - "ZNF385D", - "ITGA2B", - "RYR3", - "PLCB1" - ] + "CD14+ Mono": ["FCN1", "CD14"], + "CD16+ Mono": ["TCF7L2", "FCGR3A", "LYN"], + "cDC2": ["CST3", "COTL1", "LYZ", "DMXL2", "CLEC10A", "FCER1A"], + "Erythroblast": ["MKI67", "HBA1", "HBB"], + "Proerythroblast": ["CDK6", "SYNGR1", "HBM", "GYPA"], + "NK": ["GNLY", "NKG7", "CD247", "FCER1G", "TYROBP", "KLRG1", "FCGR3A"], + "ILC": ["ID2", "PLCG2", "GNLY", "SYNE1"], + "Naive CD20+ B": ["MS4A1", "IL4R", "IGHD", "FCRL1", "IGHM"], + "B cells": [ + "MS4A1", + "ITGB1", + "COL4A4", + "PRDM1", + "IRF4", + "PAX5", + "BCL11A", + "BLK", + "IGHD", + "IGHM" + ], + "Plasma cells": ["MZB1", "HSP90B1", "FNDC3B", "PRDM1", "IGKC", "JCHAIN"], + "Plasmablast": ["XBP1", "PRDM1", "PAX5"], + "CD4+ T": ["CD4", "IL7R", "TRBC2"], + "CD8+ T": ["CD8A", "CD8B", "GZMK", "GZMA", "CCL5", "GZMB", "GZMH", "GZMA"], + "T naive": ["LEF1", "CCR7", "TCF7"], + "pDC": ["GZMB", "IL3RA", "COBLL1", "TCF4"] } \ No newline at end of file